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Genetics:Software provides links to software for genetic research and teaching from the cellular level up to genetics of populations. Software covered by other categories, such as evolution, phylogeny and general molecular biology will be specifically excluded.

Subcategories

• Biochemistry and Molecular Biology
• Bioinformatics
• Bioinformatics Online
• Evolution
• Gene Expression
• Phylogeny
• Quantitative Genetics

Resources in This Category

• Alice Software

  http://www.alicesoftware.com/
  Database system to build and publish synonymised checklists of species. Species descriptions include pre-established fields and detailed descriptions employing any number of user-defined fields.

• BioConstructor Molecular Cloning Software

  http://www.bioconstructor.com/
  BioConstructor is a bioinformatics solution focussing on molecular cloning. Runs on Windows, Mac OS X, Linux.

• Broad Institute Genetics Software

  http://www.broad.mit.edu/tools/software.html
  Offers a wide range of software for genome sequence analysis, genetic variation, linkage analysis, expression analysis, and PCR primer selection.

• CellProfiler

  http://www.cellprofiler.org/
  Open source image analysis software designed for biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.

• CounterTrace II DNA Sequencing

  http://www.nucleics.com/DNA_sequencing_tools/DNA-sequencing-software-countertrace.html
  Software and reagent for improving the quality and read length of DNA sequence traces collected on the ABI 3730 DNA sequencer.

• CREME: Cis-REgulatory Module Explorer

  http://creme.dcode.org/
  Identifies modules of putative transcription factor binding sites that are specific to promoters of co-expressed human genes. Provides a resource for decoding microarray experiments.

• Gene Expression Open Source System

  http://va-genex.sourceforge.net/
  Open source database and analysis package used to store and analyze gene expression data. Includes microarray center workflow management, and researcher tools to analyze final data.

• GeneSifter

  http://www.genesifter.net/web/
  Web-based microarray analysis system that combines data management and analytical functions with integrated, current gene annotation from public databases. Product overview in pdf format.

• Genetic Linkage Analysis

  http://linkage.rockefeller.edu/
  Offers links and other resources for genetic analysis software from the Rockefeller University.

• Genetic Network Maps as Java Applets

  http://www.bio.davidson.edu/courses/genomics/mirror/Urchin/u0maps.htm
  Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme. Molecular interactions modelled as Petri Net.

• GENtle

  http://gentle.magnusmanske.de/
  GPL software for viewing and editing DNA and amino acid sequences. Integrated alignment, PCR, BLAST searches, and shared databases. Windows version is available for download (English and German).

• Hands on Genetics

  http://www.handsongenetics.com/
  Instructional software for basic genetics, such as DNA, PCR, Mendel, Hardy-Weinberg, meiosis and computer simulations. Freeware for Mac and Windows.

• HyPhy: Hypothesis Testing Using Phylogenies

  http://www.hyphy.org/
  Free multiplatform software package intended to perform maximum likelihood analyses of genetic sequence data.

• MapMakerDrawer

  http://www.emboss.co.nz/products.php?pid=2
  Program that draws chromosome maps (as EMF files) using the output of MapMaker EXP. Delphi source code is freely available upon request. The software is available under the MIT licence.

• MuStaR Sequence Variant Database Software

  http://www.hgu.mrc.ac.uk/Softdata/Mustar/
  Designed to create a database of mutation loci, to make this information available to as many people as possible. No longer being maintained.

• OpenBiomind

  http://code.google.com/p/openbiomind/
  OpenBiomind is an open source toolkit for analysis of gene expression, SNP and other biological datasets using advanced machine learning and pattern mining techniques, and includes traditional clustering, hybrid clustering, and other techniques.

• Phenosystems

  http://www.phenosystems.com/
  Software company developing user friendly tools for the molecular genetics community. Provides details of products, R and D collaborations and news.

• Progeny Software

  http://www.progenygenetics.com/
  Supply pedigree drawing and genetic data management software for genetic research with a built-in customizable relational database.

• PyMoods

  http://allometra.com/
  A software application for visualizing genomic data. Can be used to analyze and display relations between complete genomes, genomic fragments, proteins, ESTs, full length cDNAs, and gene expression data.

• Random Genetic Optimization

  http://www.genoptim.narod.ru/ENG/
  Genetic algorithms are a new approach to modeling based on the evolution theory in biology and use concepts such as population, descendant, parents, mutations, chromosomes, genes, etc.

• Seqool

  http://www.biossc.de/seqool/index.html
  Free Windows software tool for the analysis of DNA and RNA sequences. It includes several sequence statistics and a comprehensive set of signal search methods.

• STRand

  http://www.vgl.ucdavis.edu/informatics/strand.php
  Open-source program, provided by Davis' Veterinary Genetics Lab at the University of California, to automate or speed up the analysis of DNA fragment length polymorphism samples.

• The Sequence Manipulation Suite

  http://bioinformatics.org/sms2/
  The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. It is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.

Related Categories

• Home > Computers > Artificial Intelligence > Genetic Programming
• Home > Science > Biology > Bioinformatics
• Home > Science > Biology > Software
• Home > Science > Software

 

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