Directory of Software Resources

Home > Science > Biology > Biochemistry and Molecular Biology > Gene Expression > Software

Sites offering or presenting software to be used in research on the processes related to the central dogma of molecular biology: transcription from DNA to mRNA, splicing, translation to polypeptides, processing of the polypeptides (specific proteolysis, conjugation to carbohydrates, lipids and prosthetic groups) and the control mechanisms involved.

Subcategories

• DNA Structural Software
• Databases and Maps
• Online Services

Resources in This Category

• Advaita Bioinformatics

  http://www.advaitabio.com/
  Developer of gene pathway analysis software for analysis of genes, ontology, pathways, miRNAs, diseases, SNPs, and drugs. Provide information about iPathway software technology.

• AiO

  http://134.34.193.29/aio/
  Downloadable package integrating database, oligo ordering, DNA and protein analysis programs from Konstanz, Germany.

• Chang Bioscience

  http://www.changbioscience.com/
  Microarray analysis, lab inventory, and primer sequence database tools from San Francisco, California.

• Delila

  http://www.lecb.ncifcrf.gov/~toms/delila.html
  Software for Analysis of Protein and Nucleic-acid Sequences.

• DNA Software

  http://www.dnasoftware.com/
  Company selling software intended for molecular biology.

• DNAStar

  http://www.dnastar.com/
  Develops sequence analysis software for molecular biology.

• Easana GenoSplice

  https://www.easana.com/
  Alternative splicing and transcripts database that gathers several bioinformatic tools aiming to study expression of the human gene products.

• Gene Kinetics

  http://www.scienceandresearchdevelopmentinstitute.com/genkia.html
  Software for transcription and cell cycle genes, providing peak intervals, max values as a function of decay of gene-activating principle, inhibitory mRNA, gene amplification, anabolic capacity and proteolysis.

• Igenbio

  http://www.igenbio.com/
  Software and services for life science, particularly for microbial genomics, in Chicago, Illinois.

• Improved Outcomes Software Inc.

  http://www.improvedoutcomes.com/
  Offers programs and custom development for the visualization, analysis and classification of gene expression and proteomics data, image-guided surgery and information technology. Based in Inverary, Ontario.

• Koada Technology

  http://www.koada.com/
  Supplies software for automated analysis and quantification of microarray images.

• MB DNA Analysis

  http://www.molbiosoft.de/
  Program for statistical analysis and evaluation of the biological significance from microarray data. Includes key features, registration and download for Windows and Linux.

• Nucleic Acid and Protein Sequence Analysis Software

  http://psc.edu/index.php/resources-for-users/software
  From the Pittsburgh Supercomputing Center, Carnegie Mellon University, Pittsburgh, USA.

• Oligo Software

  http://www.oligo.net/
  Consensus, multiplex and degenerate primers, oligonucleotide database, secondary structure and difficult sequencing for researchers in PCR and related technologies. Developed since 1989, by Molecular Biology Insights Inc.

• PGEToolbox: A Matlab Toolbox for Population Genetics and Evolution

  http://bioinformatics.org/pgetoolbox/
  PGEToolbox enables population genetists to manipulate DNA polymorphism sequences and SNPs, compute basic statistics of sequence variation, and carry out neutrality tests.

• Premier Biosoft International

  http://www.premierbiosoft.com/
  Developers of software for real time PCR primer design, TaqMan, molecular beacons, DNA microarray analysis, drawing restriction plasmid maps, gateway cloning experiments, protein interaction network and functional genomics.

• Qlucore

  http://www.qlucore.com/
  Supplies software to explore and analyze microarray gene expression data sets, in Lund, Sweden.

• Redasoft Corp.

  http://www.redasoft.com/
  Makers of restriction enzyme database program, to design cloning experiments and produce high resolution graphics of plasmid maps and alignments. Includes corporate details of company in Bradford, Ontario.

• RNAdraw

  http://www.rnadraw.com/
  A program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows.

• Score Comets

  http://www.scorecomets.com/
  Site introducing the comet assay, including equipment needed, hints and tips along with information on the Comet Assay IV software scoring system.

• Short Time-series Expression Miner

  http://www.cs.cmu.edu/~jernst/stem/
  Freeware for clustering, comparing, and visualizing short time series gene expression data, maintained at Carnegie Mellon University, Pittsburgh.

• Strand Life Sciences Pvt. Ltd.

  http://www.strandls.com/
  Develops data analysis and visualization software for microarray gene expression data from its base in Bangalore, India.

• The Ribosome Builder Project

  http://rbuilder.sourceforge.net/
  A software project to simulate the ribosome.

• VisuMap

  http://www.visumap.com/
  VisuMap helps to viusalize and undertstand high dimensional by a collection of clustering and mapping algorithms, and many dynamically linked data views.

Related Categories

• Home > Science > Biology > Biochemistry and Molecular Biology > Methods and Techniques > Arrays > Software
• Home > Science > Biology > Biochemistry and Molecular Biology > Software
• Home > Science > Biology > Genetics > Software

 

Home > Science > Biology > Biochemistry and Molecular Biology > Gene Expression > Software

 

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