Directory of Homology Detection Resources
Home > Science > Biology > Bioinformatics > Online Services > Homology Detection
This category is for online services which use algorithms to find genes or proteins homologous to input DNA or amino acid sequences. The most common algorithms used are based on a method called BLAST.
Subcategories
Resources in This Category
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BLAST
http://blast.ncbi.nlm.nih.gov/
Suite of alignment tools to detect conserved sequences, similar domain architecture, gene expression profiles, and SNP using protein or nucleotide targets. Includes support and archiving of strategies at NCBI, Bethesda, Maryland. -
ESPript
http://espript.ibcp.fr/ESPript/ESPript/
Formatting of multiple sequence alignments to a color postscript file. Can include graphical features by using PDB entry. -
GENESTREAM Bioinformatics Resource Server
http://xylian.igh.cnrs.fr/
Sequence comparision and search programs, including the rigorous Smith-Waterman algorithm (in FastA and Ssearch) - from the IGH, Montpellier FR. -
mreps : maximal tandem repeats search
http://bioinfo.lifl.fr/mreps/
Open source tool for identifying serial repeats (tandem repeats) in DNA sequences. -
Sequence Alignment and Modeling System
http://compbio.soe.ucsc.edu/sam.html
Implementation of hidden Markov models for sequence analysis. Free UNIX software for nonprofit groups, and sequences can be submitted online. -
The ISREC Group Servers
http://ccg.vital-it.ch/
Detection and assessment of similarity between distantly related sequences by means of a variety of remotely-executable software - from the Swiss Inst. for Experimental Cancer Research. -
WU-BLAST Archives
http://blast.wustl.edu/
Sensitive, selective, and rapid sequence database searching with gapped alignments - from Washington Univ.-St.Louis.
Home > Science > Biology > Bioinformatics > Online Services > Homology Detection
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